연구실 bashrc 스크립트 #
#2025-05-28
#1 local
1 #alias cobi2='ssh -p 5290 ysh980101@155.230.28.211'
2 alias cobi2="ssh -p 3160 ysh980101@155.230.110.91"
3 alias cobi3="ssh -p 7777 ysh980101@155.230.110.92"
4 alias cobi4="ssh -p 4712 ysh980101@155.230.110.93"
5 # >>> conda initialize >>>
6 # !! Contents within this block are managed by 'conda init' !!
7 __conda_setup="$('/opt/anaconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null )"
8 if [ $? -eq 0 ]; then
9 eval "$__conda_setup"
10 else
11 if [ -f "/opt/anaconda3/etc/profile.d/conda.sh" ]; then
12 . "/opt/anaconda3/etc/profile.d/conda.sh"
13 else
14 export PATH="/opt/anaconda3/bin:$PATH"
15 fi
16 fi
17 unset __conda_setup
18 # <<< conda initialize <<<
19
20
21
22 source /opt/homebrew/opt/chruby/share/chruby/chruby.sh
23 source /opt/homebrew/opt/chruby/share/chruby/auto.sh
24 chruby ruby-3.1.3
#2 cobi2
1 # ~/.bashrc: executed by bash(1) for non-login shells.
2 # see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
3 # for examples
4
5 # If not running interactively, don't do anything
6 case $- in
7 *i*) ;;
8 *) return;;
9 esac
10
11 # don't put duplicate lines or lines starting with space in the history.
12 # See bash(1) for more options
13 HISTCONTROL=ignoreboth
14
15 # append to the history file, don't overwrite it
16 shopt -s histappend
17
18 # for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
19 HISTSIZE=1000
20 HISTFILESIZE=2000
21
22 # check the window size after each command and, if necessary,
23 # update the values of LINES and COLUMNS.
24 shopt -s checkwinsize
25
26 # If set, the pattern "**" used in a pathname expansion context will
27 # match all files and zero or more directories and subdirectories.
28 #shopt -s globstar
29
30 # make less more friendly for non-text input files, see lesspipe(1)
31 [ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
32
33 # set variable identifying the chroot you work in (used in the prompt below)
34 if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
35 debian_chroot=$(cat /etc/debian_chroot)
36 fi
37
38 # set a fancy prompt (non-color, unless we know we "want" color)
39 case "$TERM" in
40 xterm-color|*-256color) color_prompt=yes;;
41 esac
42
43 # uncomment for a colored prompt, if the terminal has the capability; turned
44 # off by default to not distract the user: the focus in a terminal window
45 # should be on the output of commands, not on the prompt
46 #force_color_prompt=yes
47
48 if [ -n "$force_color_prompt" ]; then
49 if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
50 # We have color support; assume it's compliant with Ecma-48
51 # (ISO/IEC-6429). (Lack of such support is extremely rare, and such
52 # a case would tend to support setf rather than setaf.)
53 color_prompt=yes
54 else
55 color_prompt=
56 fi
57 fi
58
59 if [ "$color_prompt" = yes ]; then
60 PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
61 else
62 PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
63 fi
64 unset color_prompt force_color_prompt
65
66 # If this is an xterm set the title to user@host:dir
67 case "$TERM" in
68 xterm*|rxvt*)
69 PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
70 ;;
71 *)
72 ;;
73 esac
74
75 # enable color support of ls and also add handy aliases
76 if [ -x /usr/bin/dircolors ]; then
77 test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
78 alias ls='ls --color=auto'
79 #alias dir='dir --color=auto'
80 #alias vdir='vdir --color=auto'
81
82 alias grep='grep --color=auto'
83 alias fgrep='fgrep --color=auto'
84 alias egrep='egrep --color=auto'
85 fi
86
87 # colored GCC warnings and errors
88 #export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
89
90 # some more ls aliases
91 alias ll='ls -alF'
92 alias la='ls -A'
93 alias l='ls -CF'
94
95 # Add an "alert" alias for long running commands. Use like so:
96 # sleep 10; alert
97 alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
98
99 # Alias definitions.
100 # You may want to put all your additions into a separate file like
101 # ~/.bash_aliases, instead of adding them here directly.
102 # See /usr/share/doc/bash-doc/examples in the bash-doc package.
103
104 if [ -f ~/.bash_aliases ]; then
105 . ~/.bash_aliases
106 fi
107
108 # enable programmable completion features (you don't need to enable
109 # this, if it's already enabled in /etc/bash.bashrc and /etc/profile
110 # sources /etc/bash.bashrc).
111 if ! shopt -oq posix; then
112 if [ -f /usr/share/bash-completion/bash_completion ]; then
113 . /usr/share/bash-completion/bash_completion
114 elif [ -f /etc/bash_completion ]; then
115 . /etc/bash_completion
116 fi
117 fi
118
119 export LANG=ko_KR.UTF-8
120
121 PS1='[\u@\h \W]\n $ '
122
123 EDITOR=vim; export EDITOR
124
125 # User specific aliases and functions
126 alias rm='rm -i'
127 alias cp='cp -i'
128 alias mv='mv -i'
129 alias l.='ls -dl .[a-zA-Z]*'
130 alias ll='ls -lht --color=tty'
131 alias ls='ls -F --color=auto --show-control-char'
132 alias grep='grep --color=auto'
133 alias vi='vim'
134 alias sudo='sudo '
135
136 alias tophatpy='/usr/local/src/tophat-2.0.13/src/tophat.py'
137
138 KALLISTO=/data1/packages/kallisto
139 BOWTIE2=/data1/packages/bowtie2
140 BWA=/data1/packages/bwa/bin
141 BISMARK=/data3/workshop/2023_methylation_analysis/tool/Bismark-0.22.3/
142 TOPHAT=/usr/local/src/tophat-2.0.13/src/
143 SRA=/data/home/ysh980101/2310/sratoolkit/sratoolkit.3.0.7-centos_linux64/bin
144
145 TOOLS=$TOOLS:$BOWTIE2:$BISMARK:$TOPHAT:$KALLISTO:$BWA:$SRA
146 PATH=$PATH:$TOOLS
147
148 export PATH
149
150
151 # >>> conda initialize >>>
152 # !! Contents within this block are managed by 'conda init' !!
153 __conda_setup="$('/data1/home/ysh980101/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
154 if [ $? -eq 0 ]; then
155 eval "$__conda_setup"
156 else
157 if [ -f "/data1/home/ysh980101/miniconda3/etc/profile.d/conda.sh" ]; then
158 . "/data1/home/ysh980101/miniconda3/etc/profile.d/conda.sh"
159 else
160 export PATH="/data1/home/ysh980101/miniconda3/bin:$PATH"
161 fi
162 fi
163 unset __conda_setup
164 # <<< conda initialize <<<
165
166 alias jupyter='nohup jupyter lab --config .jupyter/jupyter_lab_config.py & >/dev/null'
167
168
169
170
171
172
173 PATH="/data1/home/ysh980101/perl5/bin${PATH:+:${PATH}}"; export PATH;
174 PERL5LIB="/data1/home/ysh980101/perl5/lib/perl5${PERL5LIB:+:${PERL5LIB}}"; export PERL5LIB;
175 PERL_LOCAL_LIB_ROOT="/data1/home/ysh980101/perl5${PERL_LOCAL_LIB_ROOT:+:${PERL_LOCAL_LIB_ROOT}}"; export PERL_LOCAL_LIB_ROOT;
176 PERL_MB_OPT="--install_base \"/data1/home/ysh980101/perl5\""; export PERL_MB_OPT;
177 PERL_MM_OPT="INSTALL_BASE=/data1/home/ysh980101/perl5"; export PERL_MM_OPT;
#3 cobi3
# ~/.bashrc: executed by bash(1) for non-login shells.
# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
# for examples
# If not running interactively, don't do anything
case $- in
*i*) ;;
*) return;;
esac
# don't put duplicate lines or lines starting with space in the history.
# See bash(1) for more options
HISTCONTROL=ignoreboth
# append to the history file, don't overwrite it
shopt -s histappend
# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
HISTSIZE=1000
HISTFILESIZE=2000
# check the window size after each command and, if necessary,
# update the values of LINES and COLUMNS.
shopt -s checkwinsize
# If set, the pattern "**" used in a pathname expansion context will
# match all files and zero or more directories and subdirectories.
#shopt -s globstar
# make less more friendly for non-text input files, see lesspipe(1)
[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
# set variable identifying the chroot you work in (used in the prompt below)
if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
debian_chroot=$(cat /etc/debian_chroot)
fi
# set a fancy prompt (non-color, unless we know we "want" color)
case "$TERM" in
xterm-color|*-256color) color_prompt=yes;;
esac
# uncomment for a colored prompt, if the terminal has the capability; turned
# off by default to not distract the user: the focus in a terminal window
# should be on the output of commands, not on the prompt
#force_color_prompt=yes
if [ -n "$force_color_prompt" ]; then
if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
# We have color support; assume it's compliant with Ecma-48
# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
# a case would tend to support setf rather than setaf.)
color_prompt=yes
else
color_prompt=
fi
fi
if [ "$color_prompt" = yes ]; then
PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
else
PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
fi
unset color_prompt force_color_prompt
# If this is an xterm set the title to user@host:dir
case "$TERM" in
xterm*|rxvt*)
PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
;;
*)
;;
esac
# enable color support of ls and also add handy aliases
if [ -x /usr/bin/dircolors ]; then
test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
alias ls='ls --color=auto'
#alias dir='dir --color=auto'
#alias vdir='vdir --color=auto'
alias grep='grep --color=auto'
alias fgrep='fgrep --color=auto'
alias egrep='egrep --color=auto'
fi
# colored GCC warnings and errors
#export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
# some more ls aliases
alias ll='ls -alF'
alias la='ls -A'
alias l='ls -CF'
# Add an "alert" alias for long running commands. Use like so:
# sleep 10; alert
alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
# Alias definitions.
# You may want to put all your additions into a separate file like
# ~/.bash_aliases, instead of adding them here directly.
# See /usr/share/doc/bash-doc/examples in the bash-doc package.
if [ -f ~/.bash_aliases ]; then
. ~/.bash_aliases
fi
# enable programmable completion features (you don't need to enable
# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
# sources /etc/bash.bashrc).
if ! shopt -oq posix; then
if [ -f /usr/share/bash-completion/bash_completion ]; then
. /usr/share/bash-completion/bash_completion
elif [ -f /etc/bash_completion ]; then
. /etc/bash_completion
fi
fi
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/home/ysh980101/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/home/ysh980101/miniconda3/etc/profile.d/conda.sh" ]; then
. "/home/ysh980101/miniconda3/etc/profile.d/conda.sh"
else
export PATH="/home/ysh980101/miniconda3/bin:$PATH"
fi
fi
unset __conda_setup
# <<< conda initialize <<<
#4 cobi4
# ~/.bashrc: executed by bash(1) for non-login shells.
# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
# for examples
# If not running interactively, don't do anything
case $- in
*i*) ;;
*) return;;
esac
# don't put duplicate lines or lines starting with space in the history.
# See bash(1) for more options
HISTCONTROL=ignoreboth
# append to the history file, don't overwrite it
shopt -s histappend
# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
HISTSIZE=1000
HISTFILESIZE=2000
# check the window size after each command and, if necessary,
# update the values of LINES and COLUMNS.
shopt -s checkwinsize
# If set, the pattern "**" used in a pathname expansion context will
# match all files and zero or more directories and subdirectories.
#shopt -s globstar
# make less more friendly for non-text input files, see lesspipe(1)
[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
# set variable identifying the chroot you work in (used in the prompt below)
if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
debian_chroot=$(cat /etc/debian_chroot)
fi
# set a fancy prompt (non-color, unless we know we "want" color)
case "$TERM" in
xterm-color|*-256color) color_prompt=yes;;
esac
# uncomment for a colored prompt, if the terminal has the capability; turned
# off by default to not distract the user: the focus in a terminal window
# should be on the output of commands, not on the prompt
#force_color_prompt=yes
if [ -n "$force_color_prompt" ]; then
if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
# We have color support; assume it's compliant with Ecma-48
# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
# a case would tend to support setf rather than setaf.)
color_prompt=yes
else
color_prompt=
fi
fi
if [ "$color_prompt" = yes ]; then
PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
else
PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
fi
unset color_prompt force_color_prompt
# If this is an xterm set the title to user@host:dir
case "$TERM" in
xterm*|rxvt*)
PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
;;
*)
;;
esac
# enable color support of ls and also add handy aliases
if [ -x /usr/bin/dircolors ]; then
test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
alias ls='ls --color=auto'
#alias dir='dir --color=auto'
#alias vdir='vdir --color=auto'
alias grep='grep --color=auto'
alias fgrep='fgrep --color=auto'
alias egrep='egrep --color=auto'
fi
# colored GCC warnings and errors
#export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
# some more ls aliases
alias ll='ls -alF'
alias la='ls -A'
alias l='ls -CF'
# Add an "alert" alias for long running commands. Use like so:
# sleep 10; alert
alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
# Alias definitions.
# You may want to put all your additions into a separate file like
# ~/.bash_aliases, instead of adding them here directly.
# See /usr/share/doc/bash-doc/examples in the bash-doc package.
if [ -f ~/.bash_aliases ]; then
. ~/.bash_aliases
fi
# enable programmable completion features (you don't need to enable
# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
# sources /etc/bash.bashrc).
if ! shopt -oq posix; then
if [ -f /usr/share/bash-completion/bash_completion ]; then
. /usr/share/bash-completion/bash_completion
elif [ -f /etc/bash_completion ]; then
. /etc/bash_completion
fi
fi
# >>> user specific aliases and functions
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/home/ysh980101/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/home/ysh980101/miniconda3/etc/profile.d/conda.sh" ]; then
. "/home/ysh980101/miniconda3/etc/profile.d/conda.sh"
else
export PATH="/home/ysh980101/miniconda3/bin:$PATH"
fi
fi
unset __conda_setup
# <<< conda initialize <<<